NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126371_11227572

Scaffold Ga0126371_11227572


Overview

Basic Information
Taxon OID3300021560 Open in IMG/M
Scaffold IDGa0126371_11227572 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama - MetaG Plot_4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)885
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007671Metagenome / Metatranscriptome347Y
F096550Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0126371_112275722F007671AGGAVIDNYQYLEDWRANYRIQSVRSSLWNSRITCIDAAILSYGLLELLCSQVKRRLLAIHRRDPKKDEECGHCVALYWGGDGRVGALSKSSFKGLGHRDPVFADEMAVASSYAKAYVDMGFQPLYFGVTTLEEAVPDLDWRFAEGDLNLISARLQAAYEYGFEVGY
Ga0126371_112275723F096550N/AVPPLTLREVNDALNVARNMAEHLLLFMDGIDTFYANFATVPRMPCDPLSE
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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